PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g03390.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 464aa MW: 48934.6 Da PI: 7.2626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g03390.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.7e-06	288	314	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + Zjn_sc00034.1.g03390.1.sm.mkhc 288 SHSLAERVRREKISQRMKLLQDLVPGC 314 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.63E-5	282	325	No hit	No description
SuperFamily	SSF47459	2.49E-7	282	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.236	284	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-7	287	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GNGDRLDPAL SSMVSSPASN STAAAASDGL 60 ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPRPLVGG AGAAGQPILE NMPPMGRMDQ 120 FLADPGFTER AARLSSFDGR AGGYAGAVPG QFGLPDAGPV GALKELELGN GRDESSMSDP 180 ASASADMTLK GPSDGNARKW KASGKGKGKD GPVSTSAKDL AKEESSGKRC KFGDESNGAE 240 ENSAKGKAAQ NSNENGGKKQ GKDSTSKPTE PPKDYIHVRA RRGEATDSHS LAERVRREKI 300 SQRMKLLQDL VPGCNKFLSM KLATVNPQLD FNNLPNLLSK DATEQFILSH IPTLFYNQMQ 360 QSCGPLQNSH FPLETSGAPM PYINQTHQGN PLGCSLTNGI DNQSSMHPLD LAFCRPMNSQ 420 HPFLNGVSDS TSQAFSKTRG GGVVLKDRQE EETSCAGSGF VGAF

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GNGDRLDPAL SSMVSSPASN STAAAASDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPRPLVGG AGAAGQPILE NMPPMGRMDQ  120
FLADPGFTER AARLSSFDGR AGGYAGAVPG QFGLPDAGPV GALKELELGN GRDESSMSDP  180
ASASADMTLK GPSDGNARKW KASGKGKGKD GPVSTSAKDL AKEESSGKRC KFGDESNGAE  240
ENSAKGKAAQ NSNENGGKKQ GKDSTSKPTE PPKDYIHVRA RRGEATDSHS LAERVRREKI  300
SQRMKLLQDL VPGCNKFLSM KLATVNPQLD FNNLPNLLSK DATEQFILSH IPTLFYNQMQ  360
QSCGPLQNSH FPLETSGAPM PYINQTHQGN PLGCSLTNGI DNQSSMHPLD LAFCRPMNSQ  420
HPFLNGVSDS TSQAFSKTRG GGVVLKDRQE EETSCAGSGF VGAF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971039.1	0.0	transcription factor bHLH77
TrEMBL	A0A0A9QTY7	0.0	A0A0A9QTY7_ARUDO; Uncharacterized protein
STRING	Si001242m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	3e-37	bHLH family protein