PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00029.1.g06060.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 201aa MW: 21689.8 Da PI: 10.2377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00029.1.g06060.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	43	87	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++r + RR ++ ++f +L+ l+P + K s ++Le++++Y+ksLq Zjn_sc00029.1.g06060.1.sm.mk 43 SKRRKTRRCKLSERFKTLQHLVPGC-----DKSSYNSTLEQTIQYMKSLQ 87 6899******************9.....799999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.23	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.70E-9	41	91	No hit	No description
SMART	SM00353	8.5E-10	41	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-7	43	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-12	44	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-11	47	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MLETGYDTEL QVEFVTGMRR QEQARNNASL EDSIVTGSDG SSSKRRKTRR CKLSERFKTL 60 QHLVPGCDKS SYNSTLEQTI QYMKSLQQQV QALATTTTTT TPTPTPSAPS SLPSRAAHPV 120 AQPLYVHPGP PVTLAPMVVL GPVPMVPLGL GRVLPLPHYP APVVVMPAAA TPMYTATPDP 180 RFARPDAGLG RGSRSSIRGK E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442458.1	8e-25	transcription factor APG
TrEMBL	A0A1Z5R7F3	2e-23	A0A1Z5R7F3_SORBI; Uncharacterized protein
STRING	Sb08g020300.1	3e-24	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6283	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	6e-09	bHLH family protein