PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00029.1.g04030.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 362aa MW: 39553.4 Da PI: 8.984

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00029.1.g04030.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6e-31	233	291	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Zjn_sc00029.1.g04030.1.am.mk 233 LDDGYRWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPSYVVTIYEGVHNHA 291 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-32	220	293	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	226	293	IPR003657	WRKY domain
PROSITE profile	PS50811	31.123	228	293	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	233	292	IPR003657	WRKY domain
Pfam	PF03106	2.1E-24	234	290	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MFPCRRLVSG DRAVQQHCYD FDRLPTYEPL PLSVDSSRTT QHDDVNGQRH VGDLGGNKST 60 RRRGWRCLLA RACEETSPPS NRIEARCETR GARALIKTAT RRTVGCRMHV ALVQARATAA 120 ACLSSHPHAM EYRHPYSSGS ASASANYGDA SPAANAAGRP AVRPAPLDVF DYLSDEGAHP 180 APAAVPAVPT PRGFMYLNIF FPRGAASVAV AAEEPATMTD RIAFRMRSDK EVLDDGYRWR 240 KYGKKAVKNS PNPRNYYRCS TEGCNVKKRV ERDRDDPSYV VTIYEGVHNH ASPGTVYYAT 300 QDAASGRFFV SGTHHSSGPL KLSSMTCCPR GAGRQSYADL NLHGCAELIV AVTAELAADW 360 ST

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MFPCRRLVSG DRAVQQHCYD FDRLPTYEPL PLSVDSSRTT QHDDVNGQRH VGDLGGNKST  60
RRRGWRCLLA RACEETSPPS NRIEARCETR GARALIKTAT RRTVGCRMHV ALVQARATAA  120
ACLSSHPHAM EYRHPYSSGS ASASANYGDA SPAANAAGRP AVRPAPLDVF DYLSDEGAHP  180
APAAVPAVPT PRGFMYLNIF FPRGAASVAV AAEEPATMTD RIAFRMRSDK EVLDDGYRWR  240
KYGKKAVKNS PNPRNYYRCS TEGCNVKKRV ERDRDDPSYV VTIYEGVHNH ASPGTVYYAT  300
QDAASGRFFV SGTHHSSGPL KLSSMTCCPR GAGRQSYADL NLHGCAELIV AVTAELAADW  360
ST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-22	223	293	7	77	Probable WRKY transcription factor 4
2lex_A	2e-22	223	293	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817958.1	2e-67	probable WRKY transcription factor 57
TrEMBL	A0A2S3HST6	6e-66	A0A2S3HST6_9POAL; Uncharacterized protein
STRING	Pavir.Eb02766.1.p	2e-64	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-36	WRKY DNA-binding protein 50