PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g02600.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 211aa    MW: 22646.8 Da    PI: 5.2994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g02600.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30114172159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K vk+s++pr+YYrC+  gC vkk+ver+++dp++v++tY g Hnh 
  Zjn_sc00024.1.g02600.1.sm.mkhc 114 LDDGFKWRKYGKKAVKNSPNPRNYYRCSVDGCGVKKRVERDRDDPRYVITTYDGVHNHA 172
                                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-32102174IPR003657WRKY domain
SuperFamilySSF1182907.85E-28106174IPR003657WRKY domain
PROSITE profilePS5081131.272109174IPR003657WRKY domain
SMARTSM007745.7E-35114173IPR003657WRKY domain
PfamPF031064.7E-24115171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGSMAASLGL NPEAAFFNPC SAYSASSPFM TAADFAASFP ASEPDDAAAG AFFAELDDDC  60
RLFDFGYSPA ASVFADDGDG DDHNEKKMRY ADDEKGLRVN GRIGFRTRSE VEILDDGFKW  120
RKYGKKAVKN SPNPRNYYRC SVDGCGVKKR VERDRDDPRY VITTYDGVHN HASPAAAVVQ  180
YGGGGAHGFY SPPHSGSPAA AASYSSGSLL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-28100175378Probable WRKY transcription factor 4
2lex_A8e-28100175378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600543e-73EU960054.1 Zea mays clone 221474 WRKY67 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.12e-80probable WRKY transcription factor 50
TrEMBLC5YU854e-79C5YU85_SORBI; Uncharacterized protein
STRINGSb09g005700.17e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-43WRKY DNA-binding protein 50