PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00017.1.g03690.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 628aa MW: 70224.5 Da PI: 7.6715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00017.1.g03690.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.5	3.1e-22	130	226	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++++ +kk++W+ vs +m ergf +sp+qC+ek+++lnkryk+++e+ + Zjn_sc00017.1.g03690.1.am.mk 130 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKWKPVSMAMTERGFAVSPQQCEEKFNDLNKRYKRLTEILG 210 7*******************876667788899999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zjn_sc00017.1.g03690.1.am.mk 211 RGrACEIVEKPALLEK 226 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-19	128	253	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MILRPSQFVF LLDPVNFVVE NGGFFFGCIW PGVGVFSSEM EGNVPPRALI PGSPFDLEPA 60 MQQPRRQQFH FAQPQVHLGA FAVPAPNPAQ ELRSVVKTSL SDEEDAYDGL HDNGKTAAAA 120 AAVSQWHRVK WTSDMVKLLV SAVSYVDEEV EADHGSGSGR RKHAVLKKKG KWKPVSMAMT 180 ERGFAVSPQQ CEEKFNDLNK RYKRLTEILG RGRACEIVEK PALLEKISLS ARLKEEAKKH 240 LNSKHLHYEE MCSYHNRNRF CLLDDPTLQK SLRMALRSGH EQGTKTSFGY DDEYDQAFVS 300 DDDDEDDEYN NEANARDRHH RGHNTKKLKH DHEKTHCGSH LSEVAAIDMN KMFFEGSGGA 360 AAEKNLRGIH SNQIEQEHLK IKAQMLKIEL RHLKWLRFSK EKDRELEKMR LENEKMAMEN 420 KHMELELKLK EIEMVIVPRR SHGARTQREI DNAMPGVQPG NSGRCSAGNG ISGAQQHDTK 480 TKLLVMPLRA LRRRSSLLTG HYTTSCHTST LIGLEAAAMG ACATKSGDLK VQSEPPLVVE 540 DPPVAEGEKV KADVVPPADV GRRRSLSELL KEEGTANHDR ETGQESGGEA RVAEEEKRVN 600 PDSIRVATVA AAATVACRSD ECRRKRGC

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MILRPSQFVF LLDPVNFVVE NGGFFFGCIW PGVGVFSSEM EGNVPPRALI PGSPFDLEPA  60
MQQPRRQQFH FAQPQVHLGA FAVPAPNPAQ ELRSVVKTSL SDEEDAYDGL HDNGKTAAAA  120
AAVSQWHRVK WTSDMVKLLV SAVSYVDEEV EADHGSGSGR RKHAVLKKKG KWKPVSMAMT  180
ERGFAVSPQQ CEEKFNDLNK RYKRLTEILG RGRACEIVEK PALLEKISLS ARLKEEAKKH  240
LNSKHLHYEE MCSYHNRNRF CLLDDPTLQK SLRMALRSGH EQGTKTSFGY DDEYDQAFVS  300
DDDDEDDEYN NEANARDRHH RGHNTKKLKH DHEKTHCGSH LSEVAAIDMN KMFFEGSGGA  360
AAEKNLRGIH SNQIEQEHLK IKAQMLKIEL RHLKWLRFSK EKDRELEKMR LENEKMAMEN  420
KHMELELKLK EIEMVIVPRR SHGARTQREI DNAMPGVQPG NSGRCSAGNG ISGAQQHDTK  480
TKLLVMPLRA LRRRSSLLTG HYTTSCHTST LIGLEAAAMG ACATKSGDLK VQSEPPLVVE  540
DPPVAEGEKV KADVVPPADV GRRRSLSELL KEEGTANHDR ETGQESGGEA RVAEEEKRVN  600
PDSIRVATVA AAATVACRSD ECRRKRGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952693.1	1e-180	uncharacterized protein LOC101766818
Refseq	XP_004952694.1	1e-180	uncharacterized protein LOC101766818
TrEMBL	A0A0A9DXA8	0.0	A0A0A9DXA8_ARUDO; Uncharacterized protein
STRING	Si017397m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-67	sequence-specific DNA binding transcription factors