PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g03060.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 199aa    MW: 21563.8 Da    PI: 7.5878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g03060.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30105163159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K vk+s++pr+YYrCt  gC vkk+ver+++dp++v++tY g Hnh 
  Zjn_sc00016.1.g03060.1.sm.mkhc 105 LDDGFKWRKYGKKAVKNSPNPRNYYRCTADGCGVKKRVERDRDDPRYVVTTYDGVHNHA 163
                                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-3290165IPR003657WRKY domain
SuperFamilySSF1182909.68E-2897165IPR003657WRKY domain
PROSITE profilePS5081131.559100165IPR003657WRKY domain
SMARTSM007745.4E-35105164IPR003657WRKY domain
PfamPF031065.0E-24106162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAASLGLNPE AFFNPCSSYS AASSPFVAAD YTPSFPAGGL VDAGFDVPAE LDVHRLFDFE  60
HSPAASVFAD AGGEDGHNEQ KMRYYGGDEK KRRIGFRTRS QVEILDDGFK WRKYGKKAVK  120
NSPNPRNYYR CTADGCGVKK RVERDRDDPR YVVTTYDGVH NHASPAAVAQ YGGGGAGFYS  180
PLHSGSPPAN SYSSGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2795166778Probable WRKY transcription factor 4
2lex_A2e-2795166778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600548e-86EU960054.1 Zea mays clone 221474 WRKY67 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.11e-73probable WRKY transcription factor 50
TrEMBLA0A1E5VP702e-72A0A1E5VP70_9POAL; Putative WRKY transcription factor 50
STRINGSb09g005700.16e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-40WRKY DNA-binding protein 50