PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g07150.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 360aa    MW: 37761.5 Da    PI: 9.259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g07150.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10306351454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+ r+RRd++N +f  Lr  +P+       +++Ka+ L  A+ YI +L
  Zjn_sc00015.1.g07150.1.am.mk 306 SHVEAGRQRRDKLNCRFCDLRAAVPTV-----SRMDKASLLADATAYIAQL 351
                                   799999********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-12298359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.516302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-10305356No hitNo description
PfamPF000109.2E-8306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12306360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAPQLSPPAT QRKDTAETGG SGRPQRCHGR RKEFKLQKND QRDFVLGVRG CSGCQSLISE  60
EPSAGDRWKS ELIRRCPCNV VCSARPVLAD SDGVLTHAST PSTATRQAQL STSPSALRSS  120
SLLGPNRPCW ATDLSTLPGR TTPSAYVANA AAPCVCVCGL NGFIGSIGCL SSPVGHCYSS  180
GITAEDVDGA ASTWGTKSSS ASRQTGARPG CAVRAAQWMS FSAPRPPAAL GPRRPRGSCS  240
YWSSEIPEQW LGTGDNTLHC SSDGAAGPLS VGENQQCGEP PAAAPAAKKR GRKPGSTRGT  300
NGPVVSHVEA GRQRRDKLNC RFCDLRAAVP TVSRMDKASL LADATAYIAQ LRGRVEKLEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-16305360762Transcription factor MYC2
5gnj_B4e-16305360762Transcription factor MYC2
5gnj_E4e-16305360762Transcription factor MYC2
5gnj_F4e-16305360762Transcription factor MYC2
5gnj_G4e-16305360762Transcription factor MYC2
5gnj_I4e-16305360762Transcription factor MYC2
5gnj_M4e-16305360762Transcription factor MYC2
5gnj_N4e-16305360762Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835GRRKEFKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-19bHLH family protein