PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g06230.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 369aa    MW: 39243.3 Da    PI: 5.7694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g06230.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09203250455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zjn_sc00015.1.g06230.1.sm.mk 203 SHSLAERVRRERISQKMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 250
                                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-10197254No hitNo description
PROSITE profilePS5088815.161199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15199257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESRATGGDY IASLLSSSPR LDFGVLGGLP ALEGVAGDGG DSLEKFCGDP GFAERAARLS  60
SFSGQRFGGA GGLFGLPPPS RAASNGDFGG SRETSSVSDP ASAMRDANAK KRKAPAAPKG  120
KGMEPSSQAG EQNNSMSDAK RCKTDGGEKK DDSPVKPKAE QAGSDISVED NGQKAGKGKN  180
AKPVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQKMK VLQDLVPGCN KVIGKALMLD  240
EIINYVQSLQ RQVEMFQTCG PSASSVFTLE SSSSGFPFSD QGDVFQSYVT NGMENQCNLN  300
PLDLALSQAT NAQYAFQDGT PSSNLQQRNF WEEDLSGAFH IENGQSQENG VSAQSFHGQL  360
ESGHMKMEF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675801e-88AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445835.10.0transcription factor bHLH78
SwissprotQ9FJL44e-47BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0A9IY980.0A0A0A9IY98_ARUDO; Uncharacterized protein
STRINGSb07g026610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.13e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]