PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g04800.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 207aa MW: 22794.9 Da PI: 10.3556 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.7e-33 | 35 | 92 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ Zjn_sc00013.1.g04800.1.sm.mkhc 35 EDGYRWRKYGQKAVKNSPFPRSYYRCTNNKCTVKKRVERSSDDPSVVITTYEGQHCHH 92 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-34 | 19 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-29 | 26 | 93 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.757 | 29 | 94 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-39 | 34 | 93 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 35 | 92 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MYRRVVKPAP VKKGPKRARQ PRFAFMTKTE IDHLEDGYRW RKYGQKAVKN SPFPRSYYRC 60 TNNKCTVKKR VERSSDDPSV VITTYEGQHC HHTASALSFQ RGAGTAAHHF HSAAATVALA 120 EQMPLVPGLP AQRRLYNSLL PVRPQSSPSS SETGVCTSAL ASSLQQHLNG NEMLSRPSTS 180 SSGAPATSVE KGLLDDIVPH GAYYVPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 24 | 91 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 24 | 91 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690361.1 | 8e-79 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 1e-52 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | J3LSZ9 | 8e-78 | J3LSZ9_ORYBR; Uncharacterized protein | ||||
STRING | OB03G41750.1 | 1e-78 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-47 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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