PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g08070.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 305aa    MW: 31352.2 Da    PI: 9.9729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g08070.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-21106157156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Zjn_sc00012.1.g08070.1.am.mk 106 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGA 157
                                   68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-14106156IPR001471AP2/ERF domain
CDDcd000181.14E-17106164No hitNo description
SMARTSM003802.4E-37107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-32107164IPR001471AP2/ERF domain
PROSITE profilePS5103224.302107164IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22107165IPR016177DNA-binding domain
PRINTSPR003675.7E-11108119IPR001471AP2/ERF domain
PRINTSPR003675.7E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIRSTTRGGG AAGTVKALAA PSFIPCGRST TRAALTASSP FLTRSSSSPR YKSSPGLPPN  60
PRHLPSTRER NNTATMAPRT SEKTTQPATA ATGLALGVGC GGAGGPHYRG VRKRPWGRFA  120
AEIRDPAKKS RVWLGTYDTA EEAARAYDAA AREYRGAKAK TNFPFLSSSS PAPVAVTGGG  180
AGSGSSNSST VESFGGDVQA PPMQAMPLPP SLELDLFSRG AGAVRFPFTC YPVSQPYYFY  240
GQAAAAAGCH VLKLAPTVTV AAVAQSDSDS SSVVDLAPSP PAVSAQKTVA FDLDLNCPPP  300
TEAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23103169168ATERF1
3gcc_A9e-23103169168ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.14e-85uncharacterized LOC100280582
TrEMBLA0A0A9U7H81e-100A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P011e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-16erf domain protein 9