PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g07210.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 668aa MW: 72897.1 Da PI: 10.1156

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g07210.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	322	342	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd+C FaHg Zjn_sc00011.1.g07210.1.am.mk 322 ACPDFRK-GGCRRGDNCEFAHG 342 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.3E-5	317	343	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	318	344	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-6	322	342	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-6	322	344	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	352	375	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.23	352	376	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MSANALLPSR QPRTVAAPRR ATLIQTRRRH GSRDIDRDTR GMQPTRSRAG MMAVHARTNR 60 GAISQQNLVA ETETPYPQKD SDPDQGNQAK PSGRARRCEA TGFPFFRPPP YSDGKPPEPL 120 LGLIPGDQNP HPEKKGMASR WPRTTAPYTN GRNAKPPPLP AHHALEPEDI RFSSPLSLTE 180 QHISARRVAM PFPSAPLLAV SRPSIPATTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV 240 APYLLAALQQ YLPSNTDFSC NDDEATSMAA AAYDGDEFRM YEFKVRPCTR ARSHDWTDCS 300 FAHPGEKACR RDPRKYHYSG TACPDFRKGG CRRGDNCEFA HGVFECWLHP TRYRTQPCKD 360 GTACRRRICF FAHTPDQLRV VPSQQSSPRG VAAASSPLAA SYDGSPLRRQ AFESYLGKSV 420 MASSPTSTLV PPSRSSSSDS PPLSPDGAAT YLRGSWPGVG SPVNDVLASL RQLRLSKANS 480 SPSGGWSGYP ASAFAYGSPK AGGLYSLPTT PRATTTTMAA ATGFMHNLEP LDVGFAVDEE 540 PVQRVESGRA LRAKVFERLS KEGRTVTTGE CYDGWEPQCR RLTVQTSRGR RRLGRRPIVF 600 LPLWRTTEPG HGEAMTSLRP DMPTRQVARA EQGKRNRNAP TVPIAAAQAR GPVVAPLTYA 660 GIARFSSA

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MSANALLPSR QPRTVAAPRR ATLIQTRRRH GSRDIDRDTR GMQPTRSRAG MMAVHARTNR  60
GAISQQNLVA ETETPYPQKD SDPDQGNQAK PSGRARRCEA TGFPFFRPPP YSDGKPPEPL  120
LGLIPGDQNP HPEKKGMASR WPRTTAPYTN GRNAKPPPLP AHHALEPEDI RFSSPLSLTE  180
QHISARRVAM PFPSAPLLAV SRPSIPATTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV  240
APYLLAALQQ YLPSNTDFSC NDDEATSMAA AAYDGDEFRM YEFKVRPCTR ARSHDWTDCS  300
FAHPGEKACR RDPRKYHYSG TACPDFRKGG CRRGDNCEFA HGVFECWLHP TRYRTQPCKD  360
GTACRRRICF FAHTPDQLRV VPSQQSSPRG VAAASSPLAA SYDGSPLRRQ AFESYLGKSV  420
MASSPTSTLV PPSRSSSSDS PPLSPDGAAT YLRGSWPGVG SPVNDVLASL RQLRLSKANS  480
SPSGGWSGYP ASAFAYGSPK AGGLYSLPTT PRATTTTMAA ATGFMHNLEP LDVGFAVDEE  540
PVQRVESGRA LRAKVFERLS KEGRTVTTGE CYDGWEPQCR RLTVQTSRGR RRLGRRPIVF  600
LPLWRTTEPG HGEAMTSLRP DMPTRQVARA EQGKRNRNAP TVPIAAAQAR GPVVAPLTYA  660
GIARFSSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	589	596	RRRLGRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817903.1	1e-175	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	1e-169	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2S3HYP5	1e-174	A0A2S3HYP5_9POAL; Uncharacterized protein
STRING	ORUFI01G06440.1	1e-168	(Oryza rufipogon)
STRING	OS01T0192000-01	1e-168	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	3e-73	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]