PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g08250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 348aa    MW: 38294.5 Da    PI: 8.9064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g08250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.58.9e-21184245258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S...SSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa...edpkvveitYegeHnh 58 
                                   +Dg+ WrKYGqKe++g ++pr Y+rC+ +  gC+++++v+r++   edp + ei Y g H++
  Zjn_sc00009.1.g08250.1.am.mk 184 EDGFIWRKYGQKEINGRKHPRLYFRCANRhqGCTATRRVQRTHvddEDPPAYEIAYYGAHTC 245
                                   7*************************98777**********853337899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.777178228IPR003657WRKY domain
SuperFamilySSF1182901.57E-20178246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-22178246IPR003657WRKY domain
SMARTSM007742.5E-28183247IPR003657WRKY domain
PfamPF031069.9E-23184245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MASLSLSESL MIKGPEESQP LLLRYTGRRR KKQETKKKKK TLVAQRSPLL RRGFFPFPVN  60
RPTPRLYIPR SGGAFRVMAL ATPDAVVLEL MTMGQQSAAH LGYLLRSASP ASPHQDLAAE  120
ILRCCERVIS RLKANGGASG CCNKRKAVEH NGSAAAWSPP STPPRKRARV GAEALGVVTS  180
RTTEDGFIWR KYGQKEINGR KHPRLYFRCA NRHQGCTATR RVQRTHVDDE DPPAYEIAYY  240
GAHTCGGTAA CQPQLPPTVV DFGFSAWGCW TAPAASEQPW LSCDSETSKA GFDEAQTTTM  300
HEWHHAAALV EVPSATTPCY ASDPVTEFLD GCFDWESVIN DVPFDFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17178245368OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586303e-40KU058630.1 UNVERIFIED: Panicum miliaceum WRKY21-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817680.12e-89probable WRKY transcription factor 66
TrEMBLA0A3L6R3U88e-90A0A3L6R3U8_PANMI; Putative WRKY transcription factor 38
TrEMBLA0A3L6SL538e-90A0A3L6SL53_PANMI; Putative WRKY transcription factor 38
STRINGPavir.Ea03258.1.p2e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-23WRKY DNA-binding protein 46