PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g11280.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 30571.9 Da PI: 6.5198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 40 | 90 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Zjn_sc00007.1.g11280.1.sm.mk 40 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 90 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.23E-31 | 39 | 99 | No hit | No description |
PROSITE profile | PS51032 | 22.998 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 40 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-23 | 40 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-38 | 40 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 41 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MLLRYWSEAL NLSPRGFRGG AVPPALFQHL LRAQQAPPKL YRGVRQRHWG KWVAEIRLPR 60 NRTRLWLGTF DTAEDAAMAY DREAFKLRGE NARLNFPDLY LGKGRVGGSG RTSASAAASC 120 SSSSSSAPPT PDEIRAKQAQ EHHGEEPPAS NSEATPLLPE ADEAKNSKPQ TNSQAQAADQ 180 QSGDGNTAMF QPPVASSGSG VWGPADEAWF SAWGPGSSVW DYDMDNAHGL FLQSRFASES 240 TGMEYASSAQ DVPMTPAPAA GPAMAAASSS LPPPGPPPLP HSPTYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 36 | 97 | 1 | 63 | ATERF1 |
3gcc_A | 1e-20 | 36 | 97 | 1 | 63 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809849.1 | 1e-138 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A3L6QK78 | 1e-139 | A0A3L6QK78_PANMI; Uncharacterized protein | ||||
STRING | Si019997m | 1e-137 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-37 | ERF family protein |