PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g07110.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 934aa MW: 98845.3 Da PI: 9.2947

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g07110.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.3e-09	190	231	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq Zjn_sc00007.1.g07110.1.am.mk 190 AKTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 231 589***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.091	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-11	183	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.43E-11	183	235	No hit	No description
SuperFamily	SSF47459	2.09E-12	185	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	191	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MAYGGGFDGA EASEFDALLG ADAAAWFGGY ASPDQAAACY DGGSVWAGAG AASVLMFDRA 60 AAAVSGEEVE ECDAWFDAVD QSYGAAAPRQ APLASVGFDA TTGCFTLTER AASSGGAGRP 120 FGLLFPSTSS GSASSSDSAA PVRASQKRAY AGGEPQAISP NKKQCGAGRK TSKPKPAPAV 180 PTKDPQSLAA KTRRERISER LRTLQELVPN GTKVDLVTML EKAISYVKFL QLQVKVLATD 240 EFWPAQGGKA PEISQVREAL DAIFAQHLLQ IPTSRAREPV RTRGEHRAKS AARCVLRVAV 300 SPSSPALTIR TYVCHVRGRF TWWCAVDWSG RVAIARMGLG MCASPAIQHL GGFNRNSYPD 360 LLANVRLEAG ISSFWPTRTC SWLRFVIEGQ CRSWLKLRQA SDQARSARTL TMGRNTLGRA 420 VWTCSAFGRK SASGGHARKL TPGTTWPCAA FKMTPSRRPA CLADGCPVSR APGERDDGLP 480 TPARSFCSRS TVKKEKRTAT WSPASAKARS APLLALAARF FLWRLVCGSL LSSLSDHHHT 540 RARSLDCSLG GCGSLQPPPT GTNHHARAPT HAHACALDER GMPPLRRARV LMLLLYVASI 600 HVLLCARIHR VAAATLPDPL DPALVYPAAA TPAQPTASGG TIPAFPEQSD TVTSATCPLA 660 PAPSLLPAVR RMACGPPPAQ GGLWAPADEV ARRLETDCAR PGVPGCSKCL RALAKFQFQM 720 DIHLAPARFE SLDHVPNPVS RLSTLQIKPT NHGGGAATPA AGKKQAGRPS ENDRDCQLMG 780 ITWLLQRNAT RYGAAATAVI QALMAVDEAS AAGVAAAAVA GASAACSLSV DDMPLPAQYA 840 QLNGAGGAPC VCCFHLILLL AVLSCRVVYL LSQLLHIRLT AQGNRARVLC DLRRSAELFG 900 PVYLIGLVED ICQWADLALD FIMGSPTSRA PNFQ

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MAYGGGFDGA EASEFDALLG ADAAAWFGGY ASPDQAAACY DGGSVWAGAG AASVLMFDRA  60
AAAVSGEEVE ECDAWFDAVD QSYGAAAPRQ APLASVGFDA TTGCFTLTER AASSGGAGRP  120
FGLLFPSTSS GSASSSDSAA PVRASQKRAY AGGEPQAISP NKKQCGAGRK TSKPKPAPAV  180
PTKDPQSLAA KTRRERISER LRTLQELVPN GTKVDLVTML EKAISYVKFL QLQVKVLATD  240
EFWPAQGGKA PEISQVREAL DAIFAQHLLQ IPTSRAREPV RTRGEHRAKS AARCVLRVAV  300
SPSSPALTIR TYVCHVRGRF TWWCAVDWSG RVAIARMGLG MCASPAIQHL GGFNRNSYPD  360
LLANVRLEAG ISSFWPTRTC SWLRFVIEGQ CRSWLKLRQA SDQARSARTL TMGRNTLGRA  420
VWTCSAFGRK SASGGHARKL TPGTTWPCAA FKMTPSRRPA CLADGCPVSR APGERDDGLP  480
TPARSFCSRS TVKKEKRTAT WSPASAKARS APLLALAARF FLWRLVCGSL LSSLSDHHHT  540
RARSLDCSLG GCGSLQPPPT GTNHHARAPT HAHACALDER GMPPLRRARV LMLLLYVASI  600
HVLLCARIHR VAAATLPDPL DPALVYPAAA TPAQPTASGG TIPAFPEQSD TVTSATCPLA  660
PAPSLLPAVR RMACGPPPAQ GGLWAPADEV ARRLETDCAR PGVPGCSKCL RALAKFQFQM  720
DIHLAPARFE SLDHVPNPVS RLSTLQIKPT NHGGGAATPA AGKKQAGRPS ENDRDCQLMG  780
ITWLLQRNAT RYGAAATAVI QALMAVDEAS AAGVAAAAVA GASAACSLSV DDMPLPAQYA  840
QLNGAGGAPC VCCFHLILLL AVLSCRVVYL LSQLLHIRLT AQGNRARVLC DLRRSAELFG  900
PVYLIGLVED ICQWADLALD FIMGSPTSRA PNFQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109662	1e-109	AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-47	ROOT HAIR DEFECTIVE6