PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g02050.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 874aa MW: 93307.7 Da PI: 6.5533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g02050.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	705	743	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zjn_sc00007.1.g02050.1.am.mk 705 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 743 ****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.17	693	742	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-8	699	748	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-12	701	753	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	705	743	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-8	705	747	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-12	706	752	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MAVEANTART LLPLPPRVSA SSVSSAPTVG DLLTRVSNAV TTNSSASRHR ECSSPRSSLL 60 SRILHRRSRS VGFSCRLRLS LPRYCSSGVA KEDSVASADE AAAAPKVVGR RAEPPRDSPR 120 RSLAGMYMSL TAYSDRCCPS VSHTLTKRLR LWRAEKKAPA PAPAADDALP ASLGLGASLV 180 LLLSKSAAEL SRMAELRAQM ERLMTDVRAD VRSCNGRPSA SDGHTDSASF VKEPIVCVGD 240 QEGALSHSRG QRTGDALASI GAHSGSQTGA PASDGGSGNA GIRDEMDQME AELESELSRL 300 QADEASNDEE SVTPQQDHVA EADAKSGDTS GIHSACSVSG IEDADLDQDE EEEEDDEDDD 360 EREESPTHGG VPARELERRL HELLQSRHEA RIAELESALE RARRKLKEKE REACRWRDAA 420 KLASRFTDES RLSGIGDSQG SGSGRKGTGR TARKEQRMAR RLQLVLELIV GHHLRACEAW 480 PGDMSLIKLS SRTKHLAHAH PMQPSGREMK GDSEGGQEDD FFNQLLSTPP TAWAELDSGK 540 SPWELPAGSS EAPAFDESAF LASRLRHDQI GGDKPVMLHL SDLHGLAGVG GGEDGGNAGF 600 LPLPLFTDRT REDQALYNGF GAAGTHGASA VQPFGQVRHE KPVPAADQCQ RRASEEARLR 660 LAGRQRRVHQ PPKPRREEGR RHRGSSACGR GGDKLQTLTA SPNLRRERIA ERMKALQELV 720 PNANKTDKAS MLDEIIDYVK FLQIQVKVLS MSRLGGASAV APLVANMSPE GNGNGTEIEN 780 GSSSLRLTEQ QVAKLMEEDT GSAMQYLQGK GLCLMPISLA SVISSATSSS LPTGGAGGPQ 840 RDSGSPATTS PPLANGASGG DSRTVRDAGS GEKQ

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MAVEANTART LLPLPPRVSA SSVSSAPTVG DLLTRVSNAV TTNSSASRHR ECSSPRSSLL  60
SRILHRRSRS VGFSCRLRLS LPRYCSSGVA KEDSVASADE AAAAPKVVGR RAEPPRDSPR  120
RSLAGMYMSL TAYSDRCCPS VSHTLTKRLR LWRAEKKAPA PAPAADDALP ASLGLGASLV  180
LLLSKSAAEL SRMAELRAQM ERLMTDVRAD VRSCNGRPSA SDGHTDSASF VKEPIVCVGD  240
QEGALSHSRG QRTGDALASI GAHSGSQTGA PASDGGSGNA GIRDEMDQME AELESELSRL  300
QADEASNDEE SVTPQQDHVA EADAKSGDTS GIHSACSVSG IEDADLDQDE EEEEDDEDDD  360
EREESPTHGG VPARELERRL HELLQSRHEA RIAELESALE RARRKLKEKE REACRWRDAA  420
KLASRFTDES RLSGIGDSQG SGSGRKGTGR TARKEQRMAR RLQLVLELIV GHHLRACEAW  480
PGDMSLIKLS SRTKHLAHAH PMQPSGREMK GDSEGGQEDD FFNQLLSTPP TAWAELDSGK  540
SPWELPAGSS EAPAFDESAF LASRLRHDQI GGDKPVMLHL SDLHGLAGVG GGEDGGNAGF  600
LPLPLFTDRT REDQALYNGF GAAGTHGASA VQPFGQVRHE KPVPAADQCQ RRASEEARLR  660
LAGRQRRVHQ PPKPRREEGR RHRGSSACGR GGDKLQTLTA SPNLRRERIA ERMKALQELV  720
PNANKTDKAS MLDEIIDYVK FLQIQVKVLS MSRLGGASAV APLVANMSPE GNGNGTEIEN  780
GSSSLRLTEQ QVAKLMEEDT GSAMQYLQGK GLCLMPISLA SVISSATSSS LPTGGAGGPQ  840
RDSGSPATTS PPLANGASGG DSRTVRDAGS GEKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT056172	2e-59	BT056172.1 Zea mays full-length cDNA clone ZM_BFb0062K22 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-44	LJRHL1-like 1