PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g16440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 317aa    MW: 34125.5 Da    PI: 6.9117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g16440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11105174155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 
                                   +r+ah ++Er+RR+ +N+ ++ Lr l+P ++                ++ +  + a+++  A++Y+k+L+
  Zjn_sc00002.1.g16440.1.sm.mk 105 QRMAHIAVERNRRRLMNDHLASLRALIPASYiprysvimfvtnhatFEYVEQGDQATVVGGAIDYVKQLE 174
                                   79***************************888************9988899999*************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1396183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13103177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-8103171No hitNo description
PROSITE profilePS5088813.795104173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-9105174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAVMEQWADQ QAASATAGTA QMPFLALLQG AVLDNDDANR CKRADAADID LLESCVTQAA  60
AAVTVASSST SATKAESRRR KRPRPRPRAA PQQEKRKKPE EAESQRMAHI AVERNRRRLM  120
NDHLASLRAL IPASYIPRYS VIMFVTNHAT FEYVEQGDQA TVVGGAIDYV KQLEQQLLAL  180
QAEATARRGC RGSACAMATA ATSDGVFVSP QYTSYSEART GSRAAGVDVE ATAAVGGHVR  240
DLRLAVLHLN VTSVGRDAVV YCFNLKCHVA SWHAPSFDCV AWDLALSSYM EDGCEVATAD  300
EVAAVVHQIF AYAGACC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17787RRRKRPRPRPR
27985RKRPRPR
37997RKRPRPRPRAAPQQEKRKK
48084KRPRP
5105116RMAHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.13e-87transcription factor bHLH57-like
TrEMBLA0A1D6PKX54e-95A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGOPUNC03G01600.11e-89(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-24bHLH family protein