PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g11000.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 309aa    MW: 33666.5 Da    PI: 5.22
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g11000.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-112342741055
                                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Zjn_sc00002.1.g11000.1.sm.mkhc 234 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 274
                                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14227286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12229282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-12233278No hitNo description
PfamPF000103.7E-8234274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESSEASWHS FDPSAAMEDS DAMAQLLGVQ YFGNEQQKQL ATVYWPGQDA DQYCGGLAPY  60
YYTPQHLNSG ASYNEHGYFG GGTVAMAGDF FVPGEDMADP SFILDLNLEF EDQDGGGKPP  120
PACKRKLELE QKDEISTTGI VPNKKRGRPS TATPAPKKGK TARKSQKAAA SVQGNNHDES  180
NGILQSSSNH MSDDDSLEMT ACSNVSSASK KSSGRAKATA ERGAATDPQS LYARKRRERI  240
NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMFAP IAYNGVNVGL  300
DLKISPPQQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235682e-31AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322142e-31AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149592e-31AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-31CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661366.21e-135transcription factor bHLH54
TrEMBLA0A368SUB21e-134A0A368SUB2_SETIT; Uncharacterized protein
STRINGPavir.Ia04640.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-51bHLH family protein