PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g00450.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 374aa MW: 39996.6 Da PI: 4.9293

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g00450.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	102.9	2.7e-32	71	170	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++ksqlveK+rrLK+K++++v++ + g ++ Zjn_sc00002.1.g00450.1.sm.mk 71 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPNF 151 69***********************9977778***********************************88899* PP DUF573 79 sfskehdqkifelskkiWg 97 sf+++h+q ife+++ iW+ Zjn_sc00002.1.g00450.1.sm.mk 152 SFRSPHEQAIFEIARTIWR 170 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.1E-29	72	169	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MFPMVDDPSA AGAGVMISSS FPDADAYGNG DSEDIDFAGD PNSHASFSAA PATAPASAGA 60 GGSGSGERRA LFQRLWTDED EIVILRAFAE FTAQRGTAFA SHQYDTTPFY EDMRGRLQTG 120 FTKSQLVEKL RRLKRKYRNC VDRLRVAGPN FSFRSPHEQA IFEIARTIWR PASDKHGRDS 180 DDEGNDDGLA IDAAAAARVN GESAKSPTSR PRRGRRRRAG DFPAGDAAEA LPQAPMPAMT 240 TEDALPSFPQ PTAMDGTGTV TMEQPAAAGL PAMLSAAATV ATTTGTAENP ILASLFKEMF 300 RSMLNISSSS ATLGLEPPPA IPGLPMDGEK WRQQRILELE VYLRRIALLQ DQAQAALEEL 360 RSAPPQYGAG GTNT

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MFPMVDDPSA AGAGVMISSS FPDADAYGNG DSEDIDFAGD PNSHASFSAA PATAPASAGA  60
GGSGSGERRA LFQRLWTDED EIVILRAFAE FTAQRGTAFA SHQYDTTPFY EDMRGRLQTG  120
FTKSQLVEKL RRLKRKYRNC VDRLRVAGPN FSFRSPHEQA IFEIARTIWR PASDKHGRDS  180
DDEGNDDGLA IDAAAAARVN GESAKSPTSR PRRGRRRRAG DFPAGDAAEA LPQAPMPAMT  240
TEDALPSFPQ PTAMDGTGTV TMEQPAAAGL PAMLSAAATV ATTTGTAENP ILASLFKEMF  300
RSMLNISSSS ATLGLEPPPA IPGLPMDGEK WRQQRILELE VYLRRIALLQ DQAQAALEEL  360
RSAPPQYGAG GTNT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087680	1e-126	BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBank	EU954230	1e-126	EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBank	JX428520	1e-126	JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	1e-155	probable transcription factor At3g04930
TrEMBL	A0A2T7CC96	1e-154	A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I4R3	1e-154	A0A2T8I4R3_9POAL; Uncharacterized protein
STRING	GRMZM2G026417_P01	1e-150	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-32	DNA-binding storekeeper protein-related transcriptional regulator