PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28901.3 Da PI: 7.8391 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.3e-12 | 85 | 136 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+ lP + k s ++ + ++v+YIk+Lq XP_016651050.1 85 KKIMHRDVERQRRQEMATLYASLRSQLPLE---YLKVQSISDHVHQTVNYIKHLQ 136 5789*************************9...7788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.82E-7 | 82 | 140 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-12 | 83 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.233 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-9 | 86 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 86 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0093 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDYIPSNTLQ FDQALQQADE LFQISXXXXX XHTTQENQAL PPTPSQDGRD LTCSPTSGQK 60 RKASISSSNI TFGEIDDEQN PKGNKKIMHR DVERQRRQEM ATLYASLRSQ LPLEYLKVQS 120 ISDHVHQTVN YIKHLQSNIQ ELHNNRDRLK RSCDISCSSS ASTAVTMENS LSPMKESVVL 180 VRPCKVGVEV VVNTPMKQRL PLSRLLEILK REGLSTISCI SAQVNEKLIY TIESQVSDGK 240 CIDMFELQQR LTKNL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651050.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH120 | ||||
TrEMBL | A0A314ZIU0 | 1e-144 | A0A314ZIU0_PRUYE; Transcription factor bHLH120 | ||||
STRING | XP_009362828.1 | 1e-111 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 2e-43 | bHLH family protein |