PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650440.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 418aa    MW: 46943 Da    PI: 5.529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650440.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.8e-18100189299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +kv++ps+v+   +l +pkkf  +h   ++++++++lede+g+++e k+ ++k++    l++GW++F  a++L +gD+v+F+++    f+ +v +
  XP_016650440.1 100 LKVMMPSHVTGGFCLNIPKKFSCQHL--PKQDTMIILEDEDGKEFETKYLVEKGG----LSGGWRGFSIAHKLLQGDIVIFHVV--APFKIKVYI 186
                     69*******************86774..45788****************666666....9**********************65..589999998 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  XP_016650440.1 187 VRS 189
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1891190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2292191IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-2297188No hitNo description
SMARTSM010193.5E-1499190IPR003340B3 DNA binding domain
PROSITE profilePS5086312.01299190IPR003340B3 DNA binding domain
PfamPF023621.0E-15100189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MATREPMAVL QDQNRNFSYP PSESMKMEKL FGQKSSCLEL MALSNVVNVN PIMSQSHKRK  60
RVITRVKVES LYDSSEAQSS VMARAKEVEA SLDPRFPVLL KVMMPSHVTG GFCLNIPKKF  120
SCQHLPKQDT MIILEDEDGK EFETKYLVEK GGLSGGWRGF SIAHKLLQGD IVIFHVVAPF  180
KIKVYIVRSN GLDEVDCVHG LMRLDACTKQ IDAGQIIPYE TEKSGPVSDQ SENDSEDLGF  240
EFMDGLRLAE SDVTFKEVKC MVNFTVVVNG LVINSEFSNY ILTKYYELCC SQKAFLHEHL  300
LEGLNCKLIA GVISETVNIA DAIRACKITT TEGDFSTWSK TLKAFEDLGM NAGFLRARLD  360
RLASLASESK RLKEARLEKD HPEEEMRSLD ANPLEVKETI NMTSILELTF QEVAKAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650440.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251MZW70.0A0A251MZW7_PRUPE; Uncharacterized protein
STRINGXP_008236548.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein