PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647088.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 487aa    MW: 55498.9 Da    PI: 6.6461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647088.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-066384223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg +F+ + +Lk+H+++H
  XP_016647088.1 63 TCQECGATFKKPAYLKQHMQSH 84
                    6*******************99 PP
2zf-C2H2188e-06162186123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C   dC  sF+rk++L+rH+  H
  XP_016647088.1 162 YVCLvdDCRSSFRRKDHLNRHLLQH 186
                     899999***************9887 PP
3zf-C2H217.31.3e-05191216123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C++ F ++ n++rH r  H
  XP_016647088.1 191 FKCPieNCNRGFVSQGNMRRHVRElH 216
                     89*********************988 PP
4zf-C2H2232.1e-07231253123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+dCgk+F+  s L++H ++H
  XP_016647088.1 231 HVCQDCGKVFKFASKLQKHENSH 253
                     79******************999 PP
5zf-C2H212.90.00034321345223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C  +Fs+ksnL++H +  H
  XP_016647088.1 321 KCSykGCLHTFSTKSNLHQHVKAvH 345
                     688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.21E-91784No hitNo description
SMARTSM00355171941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9331946IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-65985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8246289IPR007087Zinc finger, C2H2
SMARTSM003550.00386284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-6157188No hitNo description
Gene3DG3DSA:3.30.160.605.9E-8159188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0071162186IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034162191IPR007087Zinc finger, C2H2
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-6189213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-6189253No hitNo description
SMARTSM003552.0E-4191216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.715191221IPR007087Zinc finger, C2H2
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
SMARTSM003550.042231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074231258IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-5232253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SMARTSM003552.3261286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
SMARTSM0035546289310IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.59E-5302357No hitNo description
SMARTSM003550.016320345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.593320350IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4321345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280322345IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5346374IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.2351377IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGIREAEEEG PIFRDIRRYY CEYCGICRSK KTLIASHMLT HHKEEMEMAK EADGEGEREK  60
PNTCQECGAT FKKPAYLKQH MQSHSLELIF YVLDEVSVVF ASIEVRSFAG IGILKKYLLD  120
NVKHWIPHKE LQNAQGFVLN GPVPGGRPPG KLHQASLNHR PYVCLVDDCR SSFRRKDHLN  180
RHLLQHQGKL FKCPIENCNR GFVSQGNMRR HVRELHNEDD PSAYVGGQKQ HVCQDCGKVF  240
KFASKLQKHE NSHVKLDSVE AFCSEPGCMK YFSNQKCLKA HIQSCHQHIT CEICGTKKLK  300
RNIERHLCMH EGGRASVERI KCSYKGCLHT FSTKSNLHQH VKAVHLEHKP FVCSFSGCGM  360
RFAYKHVRDK HEKTGRHVYA YHHRPLLSFS TNHSRVECPD DSAPTDADFG PESNSELGSS  420
FDDPDPDPDY DDDDDLDSYS DSGNDLDPHS NDDSDPNLEF VFDSDPDLDF DSDSDPDSSS  480
DPDPNSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535394e-99AC253539.1 Prunus persica cultivar Lovell clone JGIBIXB-13K15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647088.10.0PREDICTED: transcription factor IIIA-like
TrEMBLA0A498HTS71e-180A0A498HTS7_MALDO; Uncharacterized protein
STRINGXP_008242644.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-92transcription factor IIIA