PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515513.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1021aa    MW: 112529 Da    PI: 7.3592
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_016515513.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225
                     99*****************************9545444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_016515513.1 226 QQLLLGIRRA 235
                     889****997 PP
2Auxin_resp119.62.4e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_016515513.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                     79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-44124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-19133225No hitNo description
PROSITE profilePS5086311.97134236IPR003340B3 DNA binding domain
SMARTSM010195.6E-23134236IPR003340B3 DNA binding domain
PfamPF023622.2E-20134235IPR003340B3 DNA binding domain
PfamPF065071.3E-34260343IPR010525Auxin response factor
PROSITE profilePS5174514.4329851021IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MKTPGNTAGA QQAAANVNPA EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSMPQP NYLHSLSGSV LQNVGSGADL SRQLGLPAAP QLPQHNTLQF  480
GTQRPNQQGQ MPATTLSPVG SIMQSQQQQL SDISQLPRQN PINQSVPTNQ VQAQLLQAQS  540
LVQSQNVLQQ QQSLQNQLQR NLPQQQQIMN QTQQQSFMPS QPSDPLSQQM HFSDNQLQLQ  600
LLQKLHHHQQ SLLAQQSVLQ QQSQLGPIQD QQKQLLDVSQ NFSRSLATSQ MLDMSQTTST  660
STSLSQSQVV QQQMTSQSNF RFSQPNQQSK LHQQPGILPE LPGQVGQNLP PTTNQLSTNC  720
SSLLTGAAGG GQSVVTDDVP SCSTSPSTNN CQNAVQPIMS GRIHRGTAAG DEATQSSVPL  780
LNSSGFEAMS TNSNLIKDLQ HKSDVKPSVN ISKSQNHGFL APQTYLHTAA PHMDYLDSSS  840
SATSVCFSQN DVQLQQTMNP LSFSTQPVIF RDSQDGEVQG DPRNSVAFGS NMDNQLGLPM  900
MSDPLVTNSL MDSRKDLSNN ISSGGGMLSS YENPKEAQPE LSSSMVSQSF GVPDMAFNSI  960
DSTINEGSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI DIARYSGYED LKQDLARRFG  1020
X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712336447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515513.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1S4DQ130.0A0A1S4DQ13_TOBAC; Auxin response factor
STRINGXP_009594540.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19