PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509382.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21038.2 Da    PI: 8.6776
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33.1e-111757343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     ++k+  +v +s+ ++ + K A  LS+LC++++a+iifs t
  XP_016509382.1 17 LKDKRDEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSIT 57
                    5789999*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0015166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.4767IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-14982IPR002100Transcription factor, MADS-box
PfamPF003191.6E-91862IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARMTSQMKS KSEKTFLKDK RDEKVALSNK QKALSKRAMD LSTLCGIDIA IIIFSITAEP  60
FLFGNPNVES VVERFSQAKQ PFYLMSSRKT THENTRDGEE NNTMKKKKKK AINEEEKGAT  120
LEIFEPTNLE RLENLKQEID ELEKNLTEKI DELQSEIVVK DPKYVLEMNA TKCSAMPSKW  180
LNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509382.11e-131PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4D7L91e-130A0A1S4D7L9_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009785906.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-08AGAMOUS-like 61