PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506875.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 361aa    MW: 39762.4 Da    PI: 8.5632
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30168227159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a gCpvkkkv+rs +d+++v+ tYegeHnh+
  XP_016506875.1 168 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApGCPVKKKVQRSIDDQSIVVATYEGEHNHP 227
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-29159227IPR003657WRKY domain
PROSITE profilePS5081126.968163229IPR003657WRKY domain
SuperFamilySSF1182909.55E-26165228IPR003657WRKY domain
SMARTSM007741.5E-35168228IPR003657WRKY domain
PfamPF031066.9E-25169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPLPV LDKVAKQEVQ SNFTGLSRDT MLVKDEAGDL LEELNRVSSE  60
NKKLTEMLTV VCENYNALRN QLMEYMNNQQ NNGVVDDSAG SRKRKAENIS NPNNNNKNNN  120
LDIVCGRSSE SSSSDEESSC KKPREEHIKT KVSVVSMKTE ASDTSLIVKD GYQWRKYGQK  180
VTRDNPSPRA YFRCSFAPGC PVKKKVQRSI DDQSIVVATY EGEHNHPINP SKPEAAAGTT  240
TTTTTTTSSG SRLNVRTIVG TTASVPCSTT LNPSGPTITL DLTEPKTVAK GDIMKTSSSI  300
SPTGGNRHRT TERDHYSKPE FQQFLIEQMA SSLTKDPSFK AALAAAISGK ILQHNNQTSR  360
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201672301375WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280220.0AB028022.1 Nicotiana tabacum wizz mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506875.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A1S4D0B00.0A0A1S4D0B0_TOBAC; probable WRKY transcription factor 40
STRINGXP_009627902.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-86WRKY DNA-binding protein 40