PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 37740.9 Da PI: 5.9349 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 187 | 234 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq XP_016505584.1 187 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 234 8*************************9....89999***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-15 | 181 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.82E-10 | 181 | 238 | No hit | No description |
PROSITE profile | PS50888 | 14.634 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-15 | 186 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-7 | 187 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-9 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MESTQVRSAS CGGKAGETAT GFHQISQSII MPVPMEAAGN SFTALLELPP NQALDLLVHS 60 DEMGSAKLSL PDTHNKTYYS SPLIDRASAG EFAREFSVFA AGNSPENGSF PSNPQFVKQE 120 PDDSDSNPNS SPEFSNPTFD QKTTKRKERQ KKGKESSSKK SKKSANDTSE KLPYVHVRAA 180 RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA MVLDEIINHV QSLQRQVEFL 240 SMRLAAVNPR VDFNLDSLFA AEQNGSAVDS NFAGIVAPSI WPEGQTSGNR NQYQQLLQID 300 GFNQPVWVRE EDNSSFITPE NSLLTYDSSS NSASLHQNQL KMEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780303.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
Refseq | XP_016505584.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
TrEMBL | A0A1S4CX37 | 0.0 | A0A1S4CX37_TOBAC; transcription factor bHLH48-like isoform X1 | ||||
TrEMBL | A0A1U7WNY8 | 0.0 | A0A1U7WNY8_NICSY; transcription factor bHLH48-like isoform X1 | ||||
STRING | XP_009780303.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4029 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 1e-72 | bHLH family protein |