PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016496500.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 231aa MW: 26240.8 Da PI: 9.2003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	152	210	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ XP_016496500.1 152 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 210 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	139	210	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-28	144	211	IPR003657	WRKY domain
PROSITE profile	PS50811	28.116	147	212	IPR003657	WRKY domain
SMART	SM00774	5.9E-37	152	211	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	153	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MHYSSTFIDA GEAPPPPPPP PLPPPLLLSN DLSPANFFMQ PNTSMLNNHL PLHNNSQVGC 60 DNIDWAGLFS SSINNGIDAG CYVHRAAPIN NSTEPTTMPN VSITPRNIIM EGEQQQQQQQ 120 HGGYCRDKGK FRKRKYVPPR IAFHTRSTED ILDDGFKWRK YGQKAVKNST HPRSYYRCTH 180 HTCNVKKQIQ RLSKDTSIVV TTYEGIHNHP CEKLMETLSP ILKQLQFFAR F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-23	140	209	2	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	4e-60	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016496500.1	1e-175	PREDICTED: probable WRKY transcription factor 45
TrEMBL	A0A1S4C5P0	1e-174	A0A1S4C5P0_TOBAC; probable WRKY transcription factor 45
STRING	XP_009598201.1	1e-150	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	2e-56	WRKY DNA-binding protein 56