PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490277.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 359aa    MW: 39559.5 Da    PI: 6.4186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31176234259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY++eHnh+
  XP_016490277.1 176 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTSEHNHP 234
                     79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-31166236IPR003657WRKY domain
PROSITE profilePS5081134.842170236IPR003657WRKY domain
SuperFamilySSF1182906.15E-27173236IPR003657WRKY domain
SMARTSM007741.0E-37175235IPR003657WRKY domain
PfamPF031063.6E-26177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEDDWDLHAV VRGCAASSTA ATTTTTTNSA ATTTFCSFQP RQDGNFFSFQ DPFVPRFDNP  60
NNTAFEELHN LYKPFFPKSQ PQQQPPLSPQ NIPISPLSVI GGLQDLSPQQ TLIKQQQQQH  120
IHQLNTRVLT QPKQSLSVNG SANSTTSVPH TQSPRPKRRK NQLKKVCQVP AEGLSSDMWS  180
WRKYGQKPIK GSPYPRGYYR CSTSKGCLAR KQVERNRSDP NMFIVTYTSE HNHPMPTHRN  240
SLAGSTRQKP VNSEAGTPSD SNKPTSSSPV SSPACHSPAT EKQESSKEDK EDIFEDDDDE  300
FGSSNTGLDN MEPADNDFFE GLEELAANAT GDCFPDNFPG SVQFPWLTNS ATTTAAGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-24160237280Disease resistance protein RRS1
5w3x_D2e-24160237280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-145HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490277.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1S4BN530.0A0A1S4BN53_TOBAC; WRKY transcription factor 22-like
STRINGXP_009626813.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-65WRKY family protein