PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488862.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 231aa MW: 26023 Da PI: 7.2805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H XP_016488862.1 57 FSCLYCSRKFCTSQALGGHQNAH 79 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.35E-5	54	84	No hit	No description
PROSITE profile	PS50157	10.97	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MADPNLVYDF WNQQQYSNST EMVMMSDINV ASHLNQQQQP IPIPKPNKPK VQPSRMFSCL 60 YCSRKFCTSQ ALGGHQNAHK RERAASRRTM FPVTGTDSDN RNMVHFHFLQ NNNNDKQLEP 120 SLNNYPLMTG QMLPEQNIID INGNINHTTT TTYSNPYANY CSGQLQTPAS NNINVFNPFS 180 SSDVFHPPPV PTLGLGGRHV YFTSGDATLS TAQDLSSMDN HQLNLDLTLR L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800278.1	1e-173	PREDICTED: uncharacterized protein LOC104246211
Refseq	XP_016488862.1	1e-173	PREDICTED: uncharacterized protein LOC107808811
TrEMBL	A0A1S4BJ29	1e-171	A0A1S4BJ29_TOBAC; uncharacterized protein LOC107808811
TrEMBL	A0A1U7YAY1	1e-171	A0A1U7YAY1_NICSY; uncharacterized protein LOC104246211
STRING	XP_009800278.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9238	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	5e-15	C2H2 family protein