PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016488008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 376aa MW: 41799.6 Da PI: 10.4319 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.4 | 5.2e-15 | 72 | 159 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k ++ + s++p+f++l+ XP_016488008.1 72 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPFFEKLD 159 7*************************************856666666644449********************98..56668******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.2E-26 | 70 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010431 | Biological Process | seed maturation |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MEHDEETHSH QSGGSGSRSP ESPRSNGRIT VTVASAPPPQ NTLTLALPIQ QPQPLRTSGG 60 SGGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVADIVS SREDYRKTPK 120 TDIQCKNRID TVKKKYKLEK SKIASGQGPS KWPFFEKLDQ LIGPTAKINP TIAAGGVGPS 180 NLYSSNQKLQ VPMGIPMGVR SLPHLRPHQQ LQSQQQKQKQ PFRKRPHVDS DTSESESEPE 240 LSPDSTDSFP PGTFQRKRPR IQRELMNSRQ GTRGGSGEAS GKGKNWGNSV RELTRAILKF 300 GEAYEQAESA KIQQMVEMEK QRMKFAKELE LQRMQFFMNT QLELSQLKNH RRVGNSNHRS 360 NNHTTTANNH NSSDSS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770839.1 | 0.0 | PREDICTED: uncharacterized protein LOC104221462 | ||||
Refseq | XP_016488008.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-110 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S4BGL2 | 0.0 | A0A1S4BGL2_TOBAC; trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1U7W853 | 0.0 | A0A1U7W853_NICSY; uncharacterized protein LOC104221462 | ||||
STRING | XP_009770839.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10332 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14180.1 | 6e-63 | sequence-specific DNA binding transcription factors |