PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016483155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 48634.2 Da PI: 5.1794 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.5e-11 | 380 | 425 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ XP_016483155.1 380 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 425 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.5 | 374 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-15 | 377 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-10 | 378 | 429 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 379 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-8 | 380 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-12 | 380 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPAAVAS GGGNCGYARD DFEQLLNSRA 60 SNTDIKQVFD RFVANIDPQD SNSNGLIGDT QQNHMSNMNV RSEVVAPMKQ EHEAQRQSHN 120 SQFIAAVKQE TQQNSDYSLV SQMNYQTQAQ QNDNSDLNSA MDNFARFLGA ADSNRLNQTK 180 MDGGFGTGSS NSNLTRYNSS PAGFFAQFDI ENEYGAMRGI GGYGAGGNAA AEASFPTPNR 240 FSSQTALQSG QPPSSGLLAP ISEFGAKSIE EGRAGDESFG KGHKNDDSYM TGFPIPSWDD 300 SQMLTDDFLQ VPEDNEAEPF SNVNASDNQS SEDRARPPTL LSHLSLPQTS AELSAMEKLL 360 QDSVPCKVRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDFAADY 420 IKELETQVKA LSERRSKCTC SNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212792 | 1e-109 | AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence. | |||
GenBank | HG975524 | 1e-109 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483155.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
Refseq | XP_016483156.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
Refseq | XP_016483157.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
TrEMBL | A0A1S4B2V2 | 0.0 | A0A1S4B2V2_TOBAC; transcription factor bHLH122-like | ||||
STRING | XP_009785469.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 5e-53 | bHLH family protein |