PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016482844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29712.7 Da PI: 6.6661 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.9 | 3.8e-23 | 12 | 140 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 G+rFhPt+ el+ ++Lk+ ++g++l+ e ++ +diy Pw++ + ++ e+k yfF++ +k++++ +r +r+ ++g+Wk + ++++ XP_016482844.1 12 IGVRFHPTEAELI-NFLKRFLKGEPLPSECPnFQLADIYGDqPPWEIFGASDHpEKKVRYFFTRLKKHKSEHTRVRRTCANGTWKGQIGIDPIKN 105 7************.9**********88755559999***87368***744444244566**************************99999***** PP NAM 95 kkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 kg++vg ++ + f + r+++ge + W+m+ey++ XP_016482844.1 106 GKGTVVGFRRCFKFQTSRRKEGEhNKIWLMKEYSV 140 9**************998888872556******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-26 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.384 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-15 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MSTVPVARRH TIGVRFHPTE AELINFLKRF LKGEPLPSEC PNFQLADIYG DQPPWEIFGA 60 SDHPEKKVRY FFTRLKKHKS EHTRVRRTCA NGTWKGQIGI DPIKNGKGTV VGFRRCFKFQ 120 TSRRKEGEHN KIWLMKEYSV GDDFFRENSI PKEDIIVCRI KKNIRADKNH GVTMEEQDVA 180 KIIEAMLHEP DEDYCTTVQP TPICQAEHQV MDETQKMNEH NNSSYINDCS NYQEQIYWAD 240 DVLLDIDDFG DIICC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 75 | KKVRYFFTRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU753260 | 0.0 | EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482844.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1S4B1W9 | 0.0 | A0A1S4B1W9_TOBAC; NAC domain-containing protein 90-like | ||||
STRING | XP_009590494.1 | 1e-175 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 5e-17 | NAC domain containing protein 2 |