PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 584aa MW: 63754.3 Da PI: 9.059 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_016482767.1 75 FVCEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.8e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_016482767.1 151 YKCEKCSKKYAVQSDWKAHTKTC 173 9********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.1E-6 | 74 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.31E-8 | 74 | 97 | No hit | No description |
Pfam | PF12171 | 3.8E-5 | 75 | 97 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.31E-8 | 146 | 171 | No hit | No description |
SMART | SM00355 | 71 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MAAGPSSAVF LAMREEEQNQ QMKQQQQQQQ ELHIQQQPQQ QQAPQKKRRN QPGTPNPDAE 60 IIALSPKTLM ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKSTKE VKRKVYLCPE 120 PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK YKCEKCSKKY AVQSDWKAHT KTCGTREYKC 180 DCGTLFSRRD SFITHRAFCD ALAQESARNP PSLSSIGSHL YGSSNNMSLG LSKMGSQISD 240 HSNSTDILHF GSSSNIKTSG QFDHSNLMGT TSIGASAFRP STSFFLPADQ TNHQDYAANK 300 PSIHGLMQLP DLHNNGNNNS SPSVASMFNL NFFQNSNNNS ENVGSHGNSN ISAGGGGLLL 360 PSHQFSNSSG DGSNNSSNMF SASSLLGTDH HISSSIPSLY GNHLNNNSSA SPAPPMSATA 420 LLQKAAQMGS TTSNNNMNNS SASLLKAFGS SSSATKSDIH PPPPVNFGSV VYGDPLSENH 480 LHDLVVNAYG NNDQNQQNDY GNNFEQQPPQ KKQMINNFSM ENMGTEQANR LTRDFLGVGE 540 IVRSMSGGFG SSHRDQQQMS TLDSKAAPPP QSHHQSFGGA GNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-110 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786293.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like | ||||
Refseq | XP_016482767.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Swissprot | Q9ZUL3 | 1e-129 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A1S4B1G4 | 0.0 | A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
TrEMBL | A0A1U7X614 | 0.0 | A0A1U7X614_NICSY; zinc finger protein JACKDAW-like | ||||
STRING | XP_009786293.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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