PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479424.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 318aa    MW: 35666.7 Da    PI: 9.2857
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19181214134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp g+ktLCnaCG+++rk +
  XP_016479424.1 181 CADCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 214
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-19175226IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13178215No hitNo description
PROSITE profilePS5011412.558179211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-16179214IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.43E-12180208No hitNo description
PfamPF003201.0E-16181214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTPTDHITNS TPPPPFPFVL NNEDYDLNHS LVSPYNNYQP SSASSYSSPY QFFFNSTTNQ  60
NQTGYYHHDE YYTPPHQPEG DNEGGSYDVE KKNKVGSGLK LTLWKREDKY HENQNEKDPV  120
KWMSSKINTS DGARMEKTTN NTYIKLKLED QKQQPSYPLE STDYSSNSSN NSNNNIPIRV  180
CADCNTTKTP LWRSGPKGPK TLCNACGIRQ RKARRAMAAA AAANGETLTT ETSSSSMKKK  240
VKHLHKEKIT NVNVTLPYKK RCKFGPSSSS NTAPKKLGNF EDFLIKLSNN LALHQIFPQD  300
EKEAAILLMA LSSGLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7475021e-33JQ747502.1 Nicotiana tabacum GATA-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479424.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4ARW50.0A0A1S4ARW5_TOBAC; putative GATA transcription factor 22
STRINGXP_009768461.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-17cytokinin-responsive gata factor 1