PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016478397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 45462.3 Da PI: 8.2876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.3 | 3.4e-07 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_016478397.1 234 HYCQVCGKGFKRDANLRMHMRAH 256 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 327 | 350 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + XP_016478397.1 327 YVCNRCNkKQFSVLSDLRTHEKHC 350 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.72E-6 | 233 | 258 | No hit | No description |
SMART | SM00355 | 0.0034 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.9E-7 | 234 | 293 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.653 | 234 | 261 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 74 | 289 | 322 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 21 | 327 | 349 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MIEGTTNIPC FPNTNPQNLP LYAPIHHNLD QDQDHMISSS VHVATTSSLY HSHQPNSFLY 60 NLSLLKEKVD QVQSLATMFI STNNQTIVQT SESTSMAIAN MGSLIQEIIT TASSLMFSCQ 120 KISLGSTSTT NNINSSRFLE PSQIKLQDDG HVDPLPQGFY PNETLDHWYE ENYASCSNIE 180 DNKSHSTIIA ISDHSNVQLG KRKFKNEGMQ NISSQENCDI IELDAADLLA KYTHYCQVCG 240 KGFKRDANLR MHMRAHGDEY KSNAALSNPL KNNGNDGIND RLSKLSKKYS CPQEGCRWNK 300 KHAKFQPLKS MICVKNHYKR SHCPKMYVCN RCNKKQFSVL SDLRTHEKHC GDLKWQCSCG 360 TTFSRKDKLM GHATLFVGHT PVINSLAKMG KYEQNNVQLS SITG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 1e-86 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799889.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Refseq | XP_016478397.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 1e-111 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A1S4ANS9 | 0.0 | A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A1U7YKX1 | 0.0 | A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog | ||||
STRING | XP_009799889.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11265 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-112 | C2H2 family protein |