PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016478354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36079.8 Da PI: 7.0634 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4e-14 | 112 | 163 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ XP_016478354.1 112 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 163 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.33E-13 | 110 | 167 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 110 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-16 | 110 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.294 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-10 | 117 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLHHENG LLTLPQDFYG 60 HEQQYSTASV PETTTTTTTR REKNLAVAQG GGRKKRRRRP KVCKNKEEAE NQRMTHIAVE 120 RNRRKQMNEH LAVLRSLMPE SYVQRGDQAS IVGGAIEFVK ELEHILQSLE AQKFLLLQQG 180 GGDGEGPSET TIAGDAVAAT GKYFPTPFAQ FFSYPQYTCS QLPSKYTSKS KAAIADIEVT 240 LIEAHANVRI LSRRRFRQLS KLVAAFPSLY LSVLHLNVTT LDPLVLYSIS AKVEEGCQLN 300 SADDIAGAVH HMLRIIEEEA ATLSCQA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | RKKRRRR |
2 | 93 | 98 | KKRRRR |
3 | 112 | 123 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261233 | 1e-97 | GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478354.1 | 0.0 | PREDICTED: transcription factor bHLH71-like | ||||
Swissprot | Q56XR0 | 1e-75 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | A0A1S4ANW9 | 0.0 | A0A1S4ANW9_TOBAC; transcription factor bHLH71-like | ||||
STRING | XP_009631535.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 1e-75 | bHLH family protein |
Publications ? help Back to Top | |||
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