PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474842.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 300aa MW: 33702.1 Da PI: 8.1318

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	217	239	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ Fs+ L +H ++ H XP_016474842.1 217 QCPQCSLKFSSVAALISHVQKiH 239 7******************9988 PP
2	zf-C2H2	16.1	3.3e-05	251	273	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H XP_016474842.1 251 VCPRCSKGFRDPVSLVEHVEReH 273 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	4.45E-11	7	52	No hit	No description
PROSITE profile	PS51039	7.514	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	2.8E-9	11	53	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0042	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	8.3E-12	13	51	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	4.8E-10	90	148	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	2.16E-9	93	149	No hit	No description
PROSITE profile	PS51039	7.832	98	145	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.026	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	5.9E-8	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.017	216	239	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.6E-5	217	269	No hit	No description
PROSITE pattern	PS00028	0	218	239	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.2	250	273	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	252	273	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGTPAFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLDHR SYNRHHCPKA NKNDVTVVVC 60 PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNTIKCRE 120 CTIDHCLKHR FGPDHKCPGR KKPESAFQFM NFRTGNRKDE PKKPSATSSS SWATNLFKAA 180 EAGMSKLSSE FSQTLQMGKE GSSATNRNGS GSGQVEQCPQ CSLKFSSVAA LISHVQKIHE 240 KNGVMNLTVD VCPRCSKGFR DPVSLVEHVE REHRXGVEEL QYVLGIYLWE LHQGNINSHL

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-167	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474842.1	0.0	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
Swissprot	Q0D5B9	1e-117	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A1S4ADT7	0.0	A0A1S4ADT7_TOBAC; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
STRING	XP_009587891.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5311	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]