PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016473313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 37342.8 Da PI: 5.1601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.2 | 2.7e-22 | 12 | 138 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G rFhPt+ e++ ++Lk+ ++g++l+ e ++++diy Pw++ ++eek yfF++ +k++++ +r +r+ ++g+Wka+ ++++ XP_016473313.1 12 MGKRFHPTEGEMI-NFLKRFLKGETLPSEYRFQHADIYGDrPPWEIFgVDSNSEEKVGYFFTQLKKQKSEHTRVHRTCANGTWKAQTGIVPIKNG 105 699**********.9***********99778*******87478***734555555566***************************9999*****9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg +vg ++ + f ++++ ++ W+m+ey + XP_016473313.1 106 KGIAVGFRRNFKFQCSSKEREHNKIWLMKEYYV 138 **************99999999*********75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.818 | 10 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-25 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-12 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MSTVPAARRR IMGKRFHPTE GEMINFLKRF LKGETLPSEY RFQHADIYGD RPPWEIFGVD 60 SNSEEKVGYF FTQLKKQKSE HTRVHRTCAN GTWKAQTGIV PIKNGKGIAV GFRRNFKFQC 120 SSKEREHNKI WLMKEYYVGD DFFGENNIPK EDIVVCRIKK NIREKKVKDD AVSMDEQELA 180 QIIEAMLHGP DEYNCILQPA AVCQGNETHN EFIENTMLHA EYAPNHYLSG PNYQNSQLLI 240 NSDEGNQVTI LGNQNNMMAM LTEDATTNLT TLEQEAYDQL LTAEIEQGHG ADHHTNNDSE 300 FWEAMKGILE DVNFFVPEDW QNDP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU753258 | 0.0 | EU753258.1 Nicotiana tabacum NAC transcription factor (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473313.1 | 0.0 | PREDICTED: NAC domain-containing protein 37-like | ||||
TrEMBL | A0A1S4A9J3 | 0.0 | A0A1S4A9J3_TOBAC; NAC domain-containing protein 37-like | ||||
STRING | XP_009600309.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 6e-14 | NAC domain containing protein 2 |