PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473271.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 418aa    MW: 46624.2 Da    PI: 7.0801
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.91.6e-38181278298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwse+Deiv+L+G+id+++k++++p++d++af+ef+kks++++vsk+ql +KirrLK+K++++  k +k +ke +fsk+h+qk++elskki
  XP_016473271.1 181 LFQRLWSEDDEIVILKGMIDYRSKKKSDPVADLSAFHEFIKKSLHVDVSKTQLQDKIRRLKRKYENNAGKeKKGKKERTFSKPHEQKTYELSKKI 275
                     79******************************************************************99455667999**************** PP

          DUF573  96 Wgs 98 
                     Wg+
  XP_016473271.1 276 WGK 278
                     *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.0E-35182277IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAKKHTEEQV ESGDEMEVSS PGNADSESGS ESESESEPEP EPEKQQPPLK KPPVAAPKKP  60
QPPEDSSSSA EESGSGSESE SESESEPGTQ KPNPVIVKPL ASKPMDDSKK SAPKPRSKPN  120
ATAKPTSPPP AKSSAGAGAK RPVTVHDGET KESKRSKKTP KKEIETPVKQ KTPTEDVKRQ  180
LFQRLWSEDD EIVILKGMID YRSKKKSDPV ADLSAFHEFI KKSLHVDVSK TQLQDKIRRL  240
KRKYENNAGK EKKGKKERTF SKPHEQKTYE LSKKIWGKEK TDNKGEKVEE VDRVVENGTT  300
SEKGQSKREG QDNVVLEDAV KEDEEQSADV VKREKNIGLA AQNLSLVSCE RSVAELEKWL  360
EENSGLISIE KRNEMKEKLT SLRLAEFDLC FRRVELITEQ GKLVREAMEA SGINIFQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473271.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1S4A9L40.0A0A1S4A9L4_TOBAC; mediator-associated protein 1-like
STRINGXP_009623906.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-25DNA-binding storekeeper protein-related transcriptional regulator