PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471465.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 612aa    MW: 68572.9 Da    PI: 4.4728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.4e-52291552128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtdeelvv+yLk+k+ ++++ l ++i+e+d+yk++P+dLp  +k+k+++++w+fFs+rd+ky++g r+nratk+gyWkatgkd+ +++
  XP_016471465.1  29 PPGFRFHPTDEELVVYYLKRKICRRRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRATKHGYWKATGKDRIITC 122
                     9*************************999.99**************96559999***************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfykgrap ge+tdWvmhey++
  XP_016471465.1 123 -NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 155
                     .999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6021178IPR003441NAC domain
PROSITE profilePS5100556.07428178IPR003441NAC domain
PfamPF023659.0E-2829154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKLLVDSSTP SSSSACKEIK VFGESNVFPP GFRFHPTDEE LVVYYLKRKI CRRRILLDAI  60
AETDVYKWDP EDLPDLSKLK TGDRQWFFFS PRDRKYPNGA RSNRATKHGY WKATGKDRII  120
TCNSRAVGVK KTLVFYKGRA PVGERTDWVM HEYTMDEEEL KRCENAQDYY ALYKVFKKSG  180
PGPKNGEQYG APFKEEDWAD DECPVAEVSV QQQENSTKHV NEVPAAAADA LEELLKRIAD  240
DEPVLLEPFF VDNDYALDQL VQEEDTESTL LDQSSREVNL YNHCAVVGPS CQQYNVNASF  300
DLTQSGTSQL QLHEAAEVSS APVNPEKPLH AVEEDFLEDF LEMDDLLGPE PSVQNFDDSA  360
LSIQNFDNQT PNGQIFDNPA GNLETVQFDG FDGLGEFDLY DAHLILDNEG TTVGQNGEPY  420
MNNFVNGIAY PDSTTYMSTF QNDIMNNRQM HLNHENQINH QLWRHDESFN VFNPIEGDQS  480
VVHQATSGVV YDNNTNHPMG ANQNPVAKKD DGAQSWISSN LWAFVDSIPT TPASAAESAL  540
VSRAFERMSS FSRMKLNARN INVAAGNTSA TSSSSGKSKN GFFCFSLLGV LCAVLWVLIG  600
ISDKIFGRYI SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-492818420174NAC domain-containing protein 19
3swm_B1e-492818420174NAC domain-containing protein 19
3swm_C1e-492818420174NAC domain-containing protein 19
3swm_D1e-492818420174NAC domain-containing protein 19
3swp_A1e-492818420174NAC domain-containing protein 19
3swp_B1e-492818420174NAC domain-containing protein 19
3swp_C1e-492818420174NAC domain-containing protein 19
3swp_D1e-492818420174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375250.0KF437525.1 Nicotiana benthamiana putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471465.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLA0A1S4A4D10.0A0A1S4A4D1_TOBAC; NAC domain-containing protein 17-like isoform X1
STRINGXP_009599075.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-117NAC domain containing protein 17