PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016468514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 453aa MW: 51122.9 Da PI: 5.8253 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.5 | 6.6e-22 | 127 | 223 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ + +g +kk++W+ vs+ m+ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d XP_016468514.1 127 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgcvQKKGKWKTVSRIMMTNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPALMD 221 7**************777777632223455566788**********************************************5689999888888 PP trihelix 84 ql 85 ++ XP_016468514.1 222 SM 223 77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.5E-19 | 125 | 250 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MNSSGMGGGF LSGYNGGFLG MNRLQQPQSN SNNPAHGHQT NHNNVQSLMS TKLGLENDKQ 60 IGLMDVKSCM PFGKDKAVGP SNVVNSSNIN HNNNTSDEDE PSFTEDGNGD NNGGALGKKG 120 SPWQRMKWTD NVVRLLIQVV ACVGDDGSLE GTEGLKRKSG CVQKKGKWKT VSRIMMTNGC 180 HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPALM DSMPQLSAKA KDTVKKILNS 240 KHLFYREMCA YHNGQKIPDC NDLEFPVHSS PVAAQCAKDN NGSQGDEAEE NNESDDDDDE 300 SDDEEDNHGV DERMRRVEEN GNFLPHTSGN DSFIAEINEF FQDPTKSRWE QKMWIKKRML 360 QLEEEKIGIQ AEALELEKRQ FKWQRFCRKK DRELEIERLE NEKLILENEH MSLQLKRKEL 420 EIDSKKPNIS FNSAPLSIDR PRGRDQIDAA RYH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468514.1 | 0.0 | PREDICTED: uncharacterized protein LOC107791041 | ||||
TrEMBL | A0A1S3ZW13 | 0.0 | A0A1S3ZW13_TOBAC; uncharacterized protein LOC107791041 | ||||
STRING | XP_009768464.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12913 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 4e-73 |