PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18462 Da PI: 7.7665 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.8 | 9.6e-35 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC + + C ++C+lapyfpa+qpk+f+nv +lFG+s++l++l++l+ +e++ am+s++yeA+ar++ PvyG+v+ i++l +++ ++el+ XP_016464746.1 10 ACAACNYGMKPCDPHCPLAPYFPADQPKTFQNVYRLFGVSKILQMLHQLDATEKKPAMQSIIYEANARQKHPVYGCVAEIRNLYFNIRLCEQELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++e+l XP_016464746.1 105 KVREQL 110 *99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.47 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-32 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MDLTNVTNQA CAACNYGMKP CDPHCPLAPY FPADQPKTFQ NVYRLFGVSK ILQMLHQLDA 60 TEKKPAMQSI IYEANARQKH PVYGCVAEIR NLYFNIRLCE QELQKVREQL SLYTKQLENS 120 SSTPGDSVSQ IRSENIIPPS TCGNTLSLFT QDTHGRLQVQ NQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-22 | 11 | 114 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-22 | 11 | 114 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803696.1 | 1e-120 | PREDICTED: LOB domain-containing protein 27-like isoform X2 | ||||
Refseq | XP_016464746.1 | 1e-120 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 7e-34 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1S3ZK39 | 1e-119 | A0A1S3ZK39_TOBAC; LOB domain-containing protein 27-like | ||||
TrEMBL | A0A1U7YNY1 | 1e-119 | A0A1U7YNY1_NICSY; LOB domain-containing protein 27-like isoform X2 | ||||
STRING | XP_009803689.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-36 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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