PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463306.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 383aa    MW: 43839 Da    PI: 4.87
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-0689112226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_016463306.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-489113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793160198IPR000571Zinc finger, CCCH-type
SMARTSM003564160197IPR000571Zinc finger, CCCH-type
PfamPF165433.8E-17218296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPPKQSKADL AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQNAVPKPDP KKLDAKKKKE  60
EEKAKEKELN ELFKVAISQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDVFSDKRD EDGKETMEDW DQETLEKVVA SKSQEYNKNK PTDIVCKYFL EAVEKKQYGW  180
FWVCPNGSKE CHYRHALPPG YILKSQMKAL LQEEADKMPI EEEIDEQRAK LTASTPLTTE  240
LFMEWKKKKM EEREASLAKQ RADRAKNDRM SGRELFMSDA SWFVDDVGAY DKYERDEESG  300
EPPKITFPLQ ENKESARDEA SSSMSARNID DGGEASHNNE VNDNYDDDDD DDDDDDLDVE  360
ELNELEASLS KTSLQINEPG GHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788678.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1
RefseqXP_016463306.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1
SwissprotQ0JHZ21e-173C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A1S3ZG850.0A0A1S3ZG85_TOBAC; zinc finger CCCH domain-containing protein 11-like isoform X1
TrEMBLA0A1U7XCS90.0A0A1U7XCS9_NICSY; zinc finger CCCH domain-containing protein 11-like isoform X1
STRINGXP_009788678.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-143C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]