PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461884.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 177aa MW: 19945.7 Da PI: 9.0898

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.2	1.7e-61	8	153	4	160
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ssse+vCyv+CnfCntilavsvP + ++++vtvrCGhC++llsvn+ q l+ ++ l+++ + ++ + +++ ++s++++++ XP_016461884.1 8 SSSSERVCYVHCNFCNTILAVSVPCSGIMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQKQQRSNIEDAS----KAFG-----SSSSTNYHRF 92 6899*************************************************999.5555444444433....3333.....3444555555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 + + ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aakn XP_016461884.1 93 SAIGTSPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNV 153 5666677777788777.9*****************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.9E-64	10	153	IPR006780	YABBY protein
SuperFamily	SSF47095	7.46E-8	102	163	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSLDITYSSS SERVCYVHCN FCNTILAVSV PCSGIMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQKQQ RSNIEDASKA FGSSSSTNYH RFSAIGTSPE DDQPRTMPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI THREAFSTAA KNVSCTIKHK YIDFHGMRIR NNYFNLN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461884.1	1e-131	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	3e-53	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3ZC14	1e-129	A0A1S3ZC14_TOBAC; putative axial regulator YABBY 2
STRING	XP_009792033.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-51	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]