PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455277.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 241aa    MW: 27863.6 Da    PI: 7.4699
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.58.9e-22131413128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rFhPt+ el+ ++Lk+ ++g+ l+ e   ++ +diy    Pwd+  ++ ++ +ek  y F++ +++ ++ +r +r+ ++g+Wk +    +++
  XP_016455277.1  13 MGVRFHPTEAELI-NFLKRFLKGELLPSECPnFQLADIYGDqPPWDIFgANSDHpKEKVRYIFTRFKQT-SEHTRVRRTCANGTWKGQTGIDPIK 105
                     7************.9*********977755459999***87368***7333333244455888887665.5789************8888899** PP

             NAM  94 skkgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                     ++kg++vg ++ + f + r+++ge + +W+m+ey++
  XP_016455277.1 106 NAKGTVVGFRRCFKFQTSRSKEGEhNKNWLMKEYSV 141
                     *9**************999999874789******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-263163IPR003441NAC domain
PROSITE profilePS5100526.18611164IPR003441NAC domain
PfamPF023653.0E-1513141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSMVPAARRG CIMGVRFHPT EAELINFLKR FLKGELLPSE CPNFQLADIY GDQPPWDIFG  60
ANSDHPKEKV RYIFTRFKQT SEHTRVRRTC ANGTWKGQTG IDPIKNAKGT VVGFRRCFKF  120
QTSRSKEGEH NKNWLMKEYS VGDDFFRENN IPKEDIVVCR IKKSIRSKKN HGVNMEEQDV  180
PKVIEAMLHG PGEDYCTTVQ PATICQAADQ HQVNDWYNYQ QEVNWADDML IGIDEFGDII  240
W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794658.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_016455277.10.0PREDICTED: protein SOMBRERO-like
TrEMBLA0A1S3YTD70.0A0A1S3YTD7_TOBAC; protein SOMBRERO-like
TrEMBLA0A1U7XUP10.0A0A1U7XUP1_NICSY; protein SOMBRERO-like
STRINGXP_009794658.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-15NAC domain containing protein 2