PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016454588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 204aa MW: 24186.7 Da PI: 9.8888 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.4 | 8.1e-32 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+ ++++isws +g+sf+++d+ ++ +k+Lp+yFkh+n++SF+ QLn YgFkk+ ++ we++h +F+ gkk+ll++ XP_016454588.1 26 FLTKTYEMVDDPITNSIISWSLTGTSFIIWDHIRLCSKLLPQYFKHENLSSFIYQLNNYGFKKIGLQK---------WEYEHYWFQPGKKHLLSN 111 9***************************************************************9998.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr++++ XP_016454588.1 112 IKRRNQN 118 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-43 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-32 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.81E-27 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.6E-28 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-17 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-17 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-17 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MATNNISQFS GSDGAIVLRK PRIPPFLTKT YEMVDDPITN SIISWSLTGT SFIIWDHIRL 60 CSKLLPQYFK HENLSSFIYQ LNNYGFKKIG LQKWEYEHYW FQPGKKHLLS NIKRRNQNQK 120 VQEHCYQENY YNGVETELRS QRDFNVTLMS EIEKMKEKQD DLANGIASLR EYLEKSDAKF 180 RKLLFFLARG IKQVTKKRKV EDTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-23 | 23 | 115 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-23 | 23 | 115 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-23 | 23 | 115 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016454588.1 | 1e-152 | PREDICTED: heat stress transcription factor A-9-like | ||||
TrEMBL | A0A1S3YR27 | 1e-151 | A0A1S3YR27_TOBAC; heat stress transcription factor A-9-like | ||||
STRING | XP_009594956.1 | 1e-148 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13740 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54070.1 | 2e-43 | heat shock transcription factor A9 |