PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453820.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 440aa    MW: 49998.5 Da    PI: 6.7936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12261307354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er RR+++N++f  Lr+++P        K++Ka+ L  Av YIk+L
  XP_016453820.1 261 MNHVEAERIRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYIKEL 307
                     589************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4218177IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.02E-17258328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.42E-14261312No hitNo description
Gene3DG3DSA:4.10.280.104.2E-16262325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MENLISTTSS TSQPNAFQKI LQYIVHSRQE WWVYSIFWQA TKDVNNRLIL SWGDGHFRGT  60
KDISSAKTGH QLQKKFGLDG IVETNVTDSE WFYIVSMPQC FVAEDELVVQ AYSSATQVWL  120
ASHYELQLYN CERAKEADLH GIRTLVCIAT PSGVVELGSS DVIQENWEFL QLIKSLFGSN  180
NYNITSHLPI NQVPLRDHQK ERGGSPQQVP DKRKQEMITE TAEFENSDFD NESSAINNIN  240
RSRKRKAGSS SIIIGRSEMA MNHVEAERIR REKLNHRFYA LRSVVPYVSK MDKASLLADA  300
VTYIKELKVK VEDLESKIQS QKPKNNIIEQ HDSHSASSSV FNPANNKSFS SCNGGRNGME  360
MEVKIIGTEA IIRVQSLDVN FPCARLMNVF REMEFQIYHA SVSSVKDLML QDIVIRVPDE  420
YSNKEALKSA IMTRLCGIDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-28151807195Transcription factor MYC3
4rqw_B7e-28151807195Transcription factor MYC3
4rs9_A7e-28151807195Transcription factor MYC3
4yz6_A7e-28151807195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453820.10.0PREDICTED: transcription factor MYC4-like
TrEMBLA0A1S3YPA90.0A0A1S3YPA9_TOBAC; transcription factor MYC4-like
STRINGXP_009765330.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-72bHLH family protein