PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016452211.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 684aa MW: 75722.4 Da PI: 6.5291

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016452211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2e-29	70	154	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea XP_016452211.1 70 RWPRQETIALLKIRSEMDLVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQLEA 154 8******************************************************************96..66678*****85 PP
2	trihelix	104	1.1e-32	483	568	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_016452211.1 483 RWPKAEVEALIKLRTQLDVKYQENGPKGPLWEEISAGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 568 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0052	67	129	IPR001005	SANT/Myb domain
CDD	cd12203	2.27E-25	69	134	No hit	No description
Pfam	PF13837	2.0E-19	69	155	No hit	No description
PROSITE profile	PS50090	6.888	69	127	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.468	476	540	IPR017877	Myb-like domain
SMART	SM00717	7.1E-5	480	542	IPR001005	SANT/Myb domain
CDD	cd12203	1.28E-27	482	547	No hit	No description
Pfam	PF13837	2.1E-22	482	569	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-4	482	539	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MLGVSGMISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG ISISGGFMTE EDRAIRNMEE 60 GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK 120 EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SLLLPPPITS SRPPPPPLEA 180 TPINMAMPMP SGNANTINLQ LPASQQQGTT TTVTVSSAPP NNIFVSSHQN TTSHQNIPLS 240 SSMAPSPQPA NNPINNLQAN TNFPSHQNIS AMSYSTSSST SSDEDIQRRH KKKRKWKDFF 300 ERLMKDVIDK QEDLQRRFLE TLEKRERDRM VREEAWRVQE VARMNREHDL LVQERSMAEA 360 KDAAVVSFLQ KITEQQNIQI PSNINVAPPS AQVQIQLPEN PPPPPATRSQ VVQQQTQPTV 420 LLSPAPPQPS PATPAPISLP GTIPAPVPAQ SLPLTPPVPA KNVELTPKSD NGGEGYTPAS 480 SSRWPKAEVE ALIKLRTQLD VKYQENGPKG PLWEEISAGM KKIGYNRNAK RCKEKWENIN 540 KYFKKVKESN KKRPEDSKTC PYFHQLDALY KEKAKNETSS SSFSNPSASG FALNPENNPM 600 MPIMARPEQQ WPLPPHHQQP QQHHESTRMD HDHESDNMDQ DEDDEDEEDE DEENAYEIVA 660 NKQQSSMAAA NTTTTTTASA TTTV

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MLGVSGMISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG ISISGGFMTE EDRAIRNMEE  60
GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK  120
EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SLLLPPPITS SRPPPPPLEA  180
TPINMAMPMP SGNANTINLQ LPASQQQGTT TTVTVSSAPP NNIFVSSHQN TTSHQNIPLS  240
SSMAPSPQPA NNPINNLQAN TNFPSHQNIS AMSYSTSSST SSDEDIQRRH KKKRKWKDFF  300
ERLMKDVIDK QEDLQRRFLE TLEKRERDRM VREEAWRVQE VARMNREHDL LVQERSMAEA  360
KDAAVVSFLQ KITEQQNIQI PSNINVAPPS AQVQIQLPEN PPPPPATRSQ VVQQQTQPTV  420
LLSPAPPQPS PATPAPISLP GTIPAPVPAQ SLPLTPPVPA KNVELTPKSD NGGEGYTPAS  480
SSRWPKAEVE ALIKLRTQLD VKYQENGPKG PLWEEISAGM KKIGYNRNAK RCKEKWENIN  540
KYFKKVKESN KKRPEDSKTC PYFHQLDALY KEKAKNETSS SSFSNPSASG FALNPENNPM  600
MPIMARPEQQ WPLPPHHQQP QQHHESTRMD HDHESDNMDQ DEDDEDEEDE DEENAYEIVA  660
NKQQSSMAAA NTTTTTTASA TTTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	293	QRRHKKKR
2	286	294	QRRHKKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769494.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016452211.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	3e-78	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A1S3YIY3	0.0	A0A1S3YIY3_TOBAC; trihelix transcription factor GT-2-like
TrEMBL	A0A1U7W4E1	0.0	A0A1U7W4E1_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009769494.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-71	Trihelix family protein