PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 684aa MW: 75722.4 Da PI: 6.5291 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.5 | 2e-29 | 70 | 154 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea XP_016452211.1 70 RWPRQETIALLKIRSEMDLVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQLEA 154 8********************************************************************96..66678*******85 PP | |||||||
2 | trihelix | 104 | 1.1e-32 | 483 | 568 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_016452211.1 483 RWPKAEVEALIKLRTQLDVKYQENGPKGPLWEEISAGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 568 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0052 | 67 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.27E-25 | 69 | 134 | No hit | No description |
Pfam | PF13837 | 2.0E-19 | 69 | 155 | No hit | No description |
PROSITE profile | PS50090 | 6.888 | 69 | 127 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.468 | 476 | 540 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-5 | 480 | 542 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.28E-27 | 482 | 547 | No hit | No description |
Pfam | PF13837 | 2.1E-22 | 482 | 569 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 482 | 539 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MLGVSGMISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG ISISGGFMTE EDRAIRNMEE 60 GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK 120 EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SLLLPPPITS SRPPPPPLEA 180 TPINMAMPMP SGNANTINLQ LPASQQQGTT TTVTVSSAPP NNIFVSSHQN TTSHQNIPLS 240 SSMAPSPQPA NNPINNLQAN TNFPSHQNIS AMSYSTSSST SSDEDIQRRH KKKRKWKDFF 300 ERLMKDVIDK QEDLQRRFLE TLEKRERDRM VREEAWRVQE VARMNREHDL LVQERSMAEA 360 KDAAVVSFLQ KITEQQNIQI PSNINVAPPS AQVQIQLPEN PPPPPATRSQ VVQQQTQPTV 420 LLSPAPPQPS PATPAPISLP GTIPAPVPAQ SLPLTPPVPA KNVELTPKSD NGGEGYTPAS 480 SSRWPKAEVE ALIKLRTQLD VKYQENGPKG PLWEEISAGM KKIGYNRNAK RCKEKWENIN 540 KYFKKVKESN KKRPEDSKTC PYFHQLDALY KEKAKNETSS SSFSNPSASG FALNPENNPM 600 MPIMARPEQQ WPLPPHHQQP QQHHESTRMD HDHESDNMDQ DEDDEDEEDE DEENAYEIVA 660 NKQQSSMAAA NTTTTTTASA TTTV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 293 | QRRHKKKR |
2 | 286 | 294 | QRRHKKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769494.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Refseq | XP_016452211.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 3e-78 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1S3YIY3 | 0.0 | A0A1S3YIY3_TOBAC; trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1U7W4E1 | 0.0 | A0A1U7W4E1_NICSY; trihelix transcription factor GT-2-like | ||||
STRING | XP_009769494.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-71 | Trihelix family protein |