PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446098.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 458aa    MW: 51240.3 Da    PI: 6.0813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05121141323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk Fs+   L  H+rtH
  XP_016446098.1 121 CKECGKEFSSTQALSGHLRTH 141
                     ********************9 PP
2zf-C2H216.52.4e-05151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F +   L  H+++H
  XP_016446098.1 151 HICEKCGKGFASTRALYGHMKVH 173
                     68*******************99 PP
3zf-C2H210.70.0017381403123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k F++  +L  H r H
  XP_016446098.1 381 HKCPICFKIFPSGQSLGGHKRAH 403
                     79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.065931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.863119146IPR007087Zinc finger, C2H2
SMARTSM003550.11119141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.99E-11120173No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6121150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-7121143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
PfamPF139120.0055151173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5151174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.344151178IPR007087Zinc finger, C2H2
SMARTSM003550.0028151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576677.8E-5378405No hitNo description
PfamPF139124.3E-9381404IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974381403IPR007087Zinc finger, C2H2
SMARTSM003550.25381403IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEETPEQKHR CRFCNQSCSS GRSLGGHMRV HLDLISAEKK QKIEAENKMG SEEEEEGDNH  60
FDNLSISEQS DCSMSQEKGN NISTNDVDDI DSVGYGLREN PRKSWRVSEL KLSSMKTKNL  120
CKECGKEFSS TQALSGHLRT HSKKGTTEKS HICEKCGKGF ASTRALYGHM KVHVKRSRDD  180
QESESSKQSL SDFETVCPIR KKRSKIKYKT DANPESSYAI SEVEETEEAA KTLMMLSCGV  240
RDWDEYLSIS KPLKNENVSI PETKAGCSDS GCVDGYEKKC ENEVINDEFS GKLMMINTEI  300
TRVCYSTTIL GLDNDPRSDL AFLNSCSVKN AGVDFQVLNP EKNFVSDMVN SQLERIDNSP  360
VELGTIGVMR TSPEPIKSKD HKCPICFKIF PSGQSLGGHK RAHYTGFNES KTKETMVKKL  420
EDLTDNHRSF DLNNPVNVVD GGEKDVVELN LWWVGGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757607.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_016446098.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S3Y1J70.0A0A1S3Y1J7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7UN660.0A0A1U7UN66_NICSY; zinc finger protein ZAT1-like
STRINGXP_009757607.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-14C2H2-like zinc finger protein