PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016444143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 166aa MW: 19136.7 Da PI: 9.9681 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.4e-32 | 87 | 145 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++++prsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+ XP_016444143.1 87 LDDGYRWRKYGQKAVKNNNYPRSYYKCTHQGCNVKKQVQRLSKDEGVVVTTYEGMHTHP 145 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-34 | 72 | 145 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-30 | 79 | 146 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.102 | 82 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-38 | 87 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 88 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MENQWMPFLG STCCYNSMNG WISGLKTENS NSTAREQHVS NIKHSPVGVV SSETHTTNII 60 SSLKKKGDKK IKKPRFAFQT RSQVDILDDG YRWRKYGQKA VKNNNYPRSY YKCTHQGCNV 120 KKQVQRLSKD EGVVVTTYEG MHTHPIDKPT DNFEQILHQM HIIPPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 77 | 146 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 77 | 146 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 6e-52 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 6e-52 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630533.1 | 1e-124 | PREDICTED: probable WRKY transcription factor 43 | ||||
Refseq | XP_016444143.1 | 1e-124 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q9S763 | 1e-50 | WRK45_ARATH; Probable WRKY transcription factor 45 | ||||
TrEMBL | A0A1S3XW28 | 1e-122 | A0A1S3XW28_TOBAC; probable WRKY transcription factor 43 | ||||
STRING | XP_009630533.1 | 1e-123 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01970.1 | 2e-52 | WRKY DNA-binding protein 45 |
Publications ? help Back to Top | |||
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