PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016443891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29231.5 Da PI: 8.1284 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 89 | 140 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r +h +Er+RR+++ ++ Lr+llP ++K s ++ +Av+YIk++q XP_016443891.1 89 RIMHRDIERQRRREMSALYSSLRSLLPLqY---VKGKRSVSDHMHEAVNYIKEMQ 140 789*************************66...9*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.27E-9 | 86 | 141 | No hit | No description |
PROSITE profile | PS50888 | 13.287 | 87 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-13 | 88 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 89 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0085 | 93 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MYSLQESDEL MFQIFSNPCQ QSKISQDLVM DYASLETRTH DPLNYINNNS QVNKRLPKRI 60 LGTTDNNIPD KKDETAAAAA TPDDFKLTRI MHRDIERQRR REMSALYSSL RSLLPLQYVK 120 GKRSVSDHMH EAVNYIKEMQ ANMKELEKRR DLLIKSSLPN SIRSNNFTVS PDCVTVSPCL 180 QGGIEILISV DCKAQSFPLS RVLRELLKQG INVVSCVSAK VNQRSLHTIQ IEVCDMNNID 240 HQALQQKVID LINVDL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443891.1 | 0.0 | PREDICTED: transcription factor bHLH118-like isoform X1 | ||||
TrEMBL | A0A1S3XVB9 | 0.0 | A0A1S3XVB9_TOBAC; transcription factor bHLH118-like isoform X1 | ||||
STRING | XP_009624565.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51790.1 | 4e-42 | bHLH family protein |